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Introduction Guide

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Highlights
The PDF Reader
for Research
Introduction Guide
Getting Started
Welcome to a different PDF reader! Highlights extracts the
text and images you markup and formats them into notes
on the fly. It will also extract annotations from your existing
PDFs when you open them.
Let’s go through the basics of using the app starting with
the interface. The Toolbar is located at the top and can be
hidden by a single tap on the document. To show it again
tap the document once more.
Settings
Go
Back
Display Settings
Annotation
Bar
Metadata
Format
Note
Share
Search
On a compact screen, like an iPhone or the app in Slide
Over on an iPad, the toolbar will have limited space and
some options will be tucked away under the More button.
Go Back
Display Settings
More
Share
Search
The Display Settings lets you switch between the PDF and
your Notes. On wider screens you have the additional
option of showing Both PDF and Notes side-by-side.
Rotating the screen will automatically change this setting.
On the bottom bar you will find the thumbnail view that lets
you scrub through the PDF by dragging your finger over it:
To close a PDF and go back to your files, tap the back
arrow in the top left corner.
Annotate Faster
To annotate a PDF you select the content with your finger
and use the popover to specify the markup type:
Strikethrough
Copy
Highlight
Underline
Image Selection
Note
Look Up
If you use an iPad with an Apple Pencil, you can enable the
Annotation Bar in the toolbar and select the tool there
before making the selection.
Apple Pencil and mouse pointer users also have access to
color options in the text selection popover when annotating.
To annotate even faster, enable default annotation colors.
To change an existing annotation or add a comment, tap the
annotation to bring up the annotation popover:
Delete Annotation
Color
Author
Modification Date
Comment
Remove
Comment Only
PRO
Made for Research
Extracting text is just the beginning. Highlights can extract a
range of information and is optimized for scientific articles.
Image Selection: grabs an image of the current
selection in the PDF.
iPhone & iPad
Mac
Text Recognition: OCR a selection to extract
text from PDFs without a working text layer.
PRO
Table Recognition: Convert image selections to
tables with actual data using machine learning.
PRO
Grouping
Left align
Center align
Right Align
Long Cell
Merged
Split
50 %
50 %
Mass
100 kg
10 mg
Time
32 s
10 h 10 min
Fetch metadata: Automatically detect DOI-links in
scientific literature and download the metadata.
PRO
Citation lookup: Markup the text of a citation and
tap the link icon in the Annotation Popover.
PRO
Iijima, S. Nature 354, 56–58 (1991)
Export Anywhere
Tap the Share icon in the top right corner
to share your Notes or the PDF itself.
Notes can be exported anywhere as PDF
files in the free version.
As a Pro user, you can export your notes
to editable formats such as Markdown,
TextBundle and HTML. You can also
open them directly in shoebox
applications like Evernote, DEVONthink,
Ulysses, Bear and Keep It.
Customize the appearance of your notes
using the Format options. Here you can
decide what to include in your Notes.
Sort your annotations by color lets you
use your own color categories and
sorting order for your annotations.
Copy the contents of an annotation using
the copy button in the popover. Or using
the three finger tap gesture.
PRO
Smart Copy gives you the
desired format depending on the
context.
Copying an image selection will
paste a PNG, a citation a BibTex
string and a table a CSV that can
be imported into a spreadsheet.
PRO
Highlights Pro
Unlocks all the features on your iPhone, iPad and Mac.
Essentials
Free
Pro
Read & Annotate PDFs
Smart Merge Annotations
✔
✔
✔
✔
Edit PDF Metadata
✔
✔
Handoff between iPhone, iPad and Mac
✔
✔
Sort Annotations by Color Categories
✔
✔
Export Notes as PDF
●
✔
Export Notes as Markdown, HTML & TextBundles
●
✔
Export Notes Directly to Other Apps
●
✔
Text Recognition
●
✔
Table Recognition
●
✔
Smart Copy
●
✔
Custom Default Colors for Annotation Tools
●
✔
Underline Power Tools
●
✔
Selection Power Tools
●
✔
Fetch Metadata
●
✔
Citation Lookup
●
✔
Integrate with Reference Managers
●
✔
Support for Math Formulas (MathJAX)
●
✔
Dark Mode
✔
✔
Custom Icons and Accent Colors (iOS)
●
✔
Notes
Productivity
Research
Appearance
For more information see highlightsapp.net/pro
Thank you!
More tutorials and a FAQ can be found on:
highlightsapp.net
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