Sample OTU Diversity Clinical Medication Microbiology

Diversity
sample_id INT
UN NN
Phylochip
∞
∞
best INT
Indexes
sample_id INT
UN NN
filename TEXT
NN
Indexes
Microbiology
∞
sample_id INT
UN NN
aeromonas BOOLEAN
campylobacter_jejuni BOOLEAN
Match
case_id INT
control_id INT
campylobacter_coli BOOLEAN
∞
UN NN
campylobacter_nonjejuni BOOLEAN
campylobacter_nonspecific BOOLEAN
UN NN
same_gender BOOLEAN
salmonella_typhi BOOLEAN
same_age BOOLEAN
salmonella_nontyphi BOOLEAN
same_village BOOLEAN
shigella_spp BOOLEAN
Indexes
1
Sample
id INT UN
1
NN
country_id INT
OTU
otu_id INT
UN NN
sample_id INT
num_seq INT
UN NN
center_id INT
∞
∞
UN
UN
type ENUM(...)
hospital BOOLEAN
sample_id INT
∞
UN NN
UN
UN
UN
volume FLOAT
Indexes
Clinical
UN
num_seq INT
lab_id INT
∞
hospitalized BOOLEAN
fever BOOLEAN
shigella_flexneri_3A BOOLEAN
shigella_flexneri_3B BOOLEAN
date DATE
shigella_flexneri_4A BOOLEAN
shigella_flexneri_4B BOOLEAN
Indexes
UN NN
antibiotic BOOLEAN
ampicillin BOOLEAN
gentamycin BOOLEAN
mucus BOOLEAN
dysentery TINYINT
sample_id INT
selexid BOOLEAN
pus BOOLEAN
consistency TINYINT
Medication
ciprofloxacin BOOLEAN
blood BOOLEAN
UN
shigella_flexneri_2A BOOLEAN
plate VARCHAR(45)
cotrimaxozole BOOLEAN
cur_med BOOLEAN
shigella_flexneri_1B BOOLEAN
shigella_flexneri_2B BOOLEAN
nalidixic_acid BOOLEAN
vomit BOOLEAN
shigella_flexneri_1A BOOLEAN
shigella_flexneri_4C BOOLEAN
sunkeyes BOOLEAN
iv_treatment BOOLEAN
shigella_dysenteriae1 BOOLEAN
concentration FLOAT
diarrhea_prior7 BOOLEAN
turgor BOOLEAN
shigella_nontypeable BOOLEAN
pcr_band FLOAT
Indexes
diarrhea_past7 BOOLEAN
shigella_boydii BOOLEAN
shigella_sonnei BOOLEAN
file_num INT
serial_num INT
gender ENUM(...)
Indexes
shigella_flexneri BOOLEAN
UN NN
well CHAR(3)
age_stratum TINYINT
taxname TEXT
sample_id INT
filename TEXT
UN
age INT UN
taxid INT UN
shigella_dysenteriae BOOLEAN
454
chloramphenicol BOOLEAN
erythromycin BOOLEAN
azithromycin BOOLEAN
macrolide BOOLEAN
penicillin BOOLEAN
amoxicillin BOOLEAN
other BOOLEAN
Indexes
shigella_flexneri_5A BOOLEAN
shigella_flexneri_5B BOOLEAN
shigella_flexneri_6 BOOLEAN
shigella_flexneri_X BOOLEAN
shigella_flexneri_Y BOOLEAN
shigella_nontypeable2 BOOLEAN
vibrio_cholerae BOOLEAN
vibrio_cholerae_01 BOOLEAN
vibrio_cholerae_0139 BOOLEAN
vibrio_cholerae_nontypeable BOOLEAN
vibrio_cholerae_inaba BOOLEAN
vibrio_cholerae_ogawa BOOLEAN
vibrio_parahaemolyticus BOOLEAN
vibrio_cholerae_other BOOLEAN
no_nonecoli_patho BOOLEAN
f16_ecoli BOOLEAN
nogrowth BOOLEAN
ESTA BOOLEAN
ELTB BOOLEAN
BFPA BOOLEAN
AATA BOOLEAN
AAIC BOOLEAN
EAE BOOLEAN
EAE_ONLY BOOLEAN
BFPA_EPEC BOOLEAN
ETEC_ST BOOLEAN
ETEC_STLT BOOLEAN
ETEC_LT BOOLEAN
EAEC_AATA BOOLEAN
EAEC_AAIC BOOLEAN
EAEC_TAIC BOOLEAN
diarrheagenic_ecoli_negative BOOLEAN
entamoeba BOOLEAN
giardia BOOLEAN
cryptosporidium BOOLEAN
rotavirus BOOLEAN
adenovirus BOOLEAN
adenovirus_4041 BOOLEAN
norovirus_gI BOOLEAN
norovirus_gII BOOLEAN
sapo_virus BOOLEAN
astro_virus BOOLEAN
Indexes